ORIGINAL ARTICLE
Soil bacterial community associated with twisted disease of shallot plants with the addition of casuarina and maize leaf litters
1
Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jl. Flora, Yogyakarta, Indonesia
2
School of Agriculture and Food Sciences Faculty of Science, University of Queensland, South Wing, Brisbane, Australia
A - Research concept and design; B - Collection and/or assembly of data; C - Data analysis and interpretation; D - Writing the article; E - Critical revision of the article; F - Final approval of article
Submission date: 2025-03-20
Acceptance date: 2025-08-05
Online publication date: 2025-08-25
Corresponding author
Arif Wibowo
Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jl. Flora, Yogyakarta, Indonesia
Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Jl. Flora, Yogyakarta, Indonesia
Journal of Plant Protection Research 2026;1(66):88-100
HIGHLIGHTS
- Casuarina leaf litter affects Pseudarthrobacter that suppress twisted disease
- Maize leaf litter affects Paenibacillus that increase shallot production
- Addition of leaf litter during planting more effective than before planting
KEYWORDS
16s rRNA amplicon metagenomicapplication timecore microbekeystone taxaPaenibacillusPseudarthrobacter
TOPICS
ABSTRACT
Twisted disease caused by Fusarium is one of the causes of the decline in shallot production
in Indonesia. Disease management by adding Casuarina leaf litter and maize leaf litter
during planting time has suppressed twisted disease incidence and increased shallot production
in previous studies. Bacterial communities can influence disease suppression and
increase plant production in soil. However, the effect of adding Casuarina and maize leaf
litter on the soil bacterial community, and its impact on suppressing twisted disease is still
unknown in shallot planting. In addition, no further studies have been conducted on the
effectiveness of the application time of Casuarina and maize leaf litter. This study aimed to
determine the best application time of leaf litter in suppressing twisted disease, the effect of
changes in soil bacterial communities, and bacteria that act as core microbe, biomarkers,
and keystone taxa. Results showed that adding Casuarina and maize leaf litter during planting
time was more effective than adding Casuarina and maize leaf litter two weeks before
planting. The diversity and abundance of bacteria in soil with the addition of Casuarina
leaf litter (C) were higher than those of maize leaf litter (J). In addition, Pseudarthrobacter
was found in group C, which acts as a core microbe, biomarker, and keystone taxa that
may be able to suppress pathogens that cause twisted disease. Paenibacillus acts as a core
microbe, biomarker, and keystone taxa in group J, which may increase shallot production.
This study’s results will help develop effective twisted disease management strategies to
control disease development.
ACKNOWLEDGEMENTS
The authors express their sincere gratitude to the Australian
Centre for International Agricultural Research (ACIAR) for providing the opportunity to join this outstanding research project and funding it so that this
study could be carried out successfully.
RESPONSIBLE EDITOR
Krzysztof Krawczyk
CONFLICT OF INTEREST
The authors have declared that no conflict of interests exist.
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| eISSN: | 1899-007X |
| ISSN: | 1427-4345 |
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